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PIC-SURE API Documentation

How to get started with PIC-SURE and the common endpoints you can use to query any resource registered with PIC-SURE

The PIC-SURE v2 API is a meta-API used to host any number of resources exposed through a unified set of generalized operations.

PIC-SURE Repositories:

  • PIC-SURE APIarrow-up-right: This is the repository for version 2+ of the PIC-SURE API.

  • : This is the wiki page for version 2+ of the PIC-SURE API.

  • : This is the repository for the BDC environment of PIC-SURE.

  • : This is the repository for PIC-SURE-ALL-IN-ONE.

Additional PIC-SURE Links:

  • : A link to the Avillach Lab Jenkins repository.

  • : A repository for Avillach Lab Jenkins development release control.

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Client Libraries

The following are the collected client libraries for the entire PIC-SURE project.

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PIC-SURE User Interface

The PIC-SURE User Interface acts as a visual aid for running normal queries of resources through PIC-SURE.

PIC-SURE User Interface Repositories:

  • : The main High Performance Data Store (HPDS) UI repository.

Additional PIC-SURE User Interface Links:

  • : Links to a google drawing of the PIC-SURE UI flow.

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PIC-SURE Auth Micro-App (PSAMA)

The PSAMA component of the PIC-SURE ecosystem authorizes and authenticates all actions taken within PIC-SURE.

PSAMA Repos:

Additional PSAMA Links:

  • : This is where the core of the PSAMA application is stored in GitHub

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High Performance Data Store (HPDS)

HPDS is a datastore designed to work with the PIC-SURE meta-API. It grants researchers fast, dependable access to static datasets and the ability to produce statistics-ready dataframes filtered on any variable they choose at any time.

HPDS Repositories:

  • : The main HPDS repository.

  • : Python client library to run queries against a PIC-SURE HPDS resource.

  • : R client library to run queries against a PIC-SURE HPDS resource.

: The main HPDS UI repository.

  • : This repository describes steps to prepare and annotate VCF files for loading into HPDS.

  • PIC-SURE Wikiarrow-up-right
    BioData Catalyst PIC-SUREarrow-up-right
    PIC-SURE-ALL-IN-ONEarrow-up-right
    DCPPC Presentation on PIC-SURE as a meta-APIarrow-up-right
    Avillachlab-Jenkins Repositoryarrow-up-right
    Avillachlab-Jenkins Dev Release Controlarrow-up-right
    R Client Libraryarrow-up-right
    Python Client Libraryarrow-up-right
    PIC-SURE HPDS UIarrow-up-right
    PIC-SURE UI Flowarrow-up-right
    PIC-SURE Auth MicroApp Repositoryarrow-up-right
    PSAMA Core Logicarrow-up-right
    PIC-SURE HPDSarrow-up-right
    PIC-SURE HPDS Python Clientarrow-up-right
    PIC-SURE HPDS R Clientarrow-up-right
    PIC-SURE HPDS UIarrow-up-right
    HPDS Annotationarrow-up-right