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      • 2023-07-11 NHLBI BioData Catalyst Ecosystem Release Notes
      • 2023-04-04 BioData Catalyst Ecosystem Release Notes
      • 2023-01-09 BioData Catalyst Ecosystem Release Notes
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  1. Written Documentation
  2. Analyze Data
  3. Terra
  4. Bring Data into a Workspace

Bring in Data from Gen3

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Last updated 3 years ago

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provides data for many projects and conveniently supports search across the vast set of subjects to identify the best available cohorts for research analysis. Searches are based on harmonized phenotypic variables and may be performed both within and across projects.

When a desired cohort has been identified in Gen3, the cohort may be conveniently "handed-off" to Terra for analysis. Optionally, this dataset may be enhanced with additional metadata from dbGaP, or extended to include additional researcher-provided subject data.

Here we provide essential information for all researchers using BioData Catalyst data from Gen3, including how to access and select Gen3 subject data and hand it off to Terra, as well as a description of the GA4GH Data Repository Service (DRS) protocol and data identifiers used by Gen3 and Terra.

The resources below contain the information you’ll need to access your desired data: Video: Article: ​ Article: ​ Article: ​ Article: ​Article: ​ Workspace: Workspace:

BioData Catalyst Powered by Gen3
Data Analysis with Gen3, Terra and Dockstore
Discovering Data Using Gen3
Understanding and using Gen3 data in Terra
Data Access with the GA4GH Data Repository Service (DRS)
Linking Terra to External Servers
Understanding and setting up a proxy group
BioDataCatalyst Gen3 data on Terra tutorial
TOPMed Aligner workspace