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  • NHLBI BioData Catalyst® (BDC) Documentation
  • Community
    • Who We Are
    • BDC Glossary
    • Citation and Acknowledgement
    • Strategic Planning
    • Request for Comments
      • NHLBI BioData Catalyst Ecosystem Security Statement
      • NHLBI DICOM Medical Image De-Identification Baseline Protocol
    • BDC Video Content Guidance
    • Contributing User Resources to BDC
  • Written Documentation
    • Getting Started
    • Data Access
      • Data Interoperability
      • Understanding Access
      • Submitting a dbGaP Data Access Request
      • Checking Access
    • Explore Available Data
      • Dug Semantic Search
        • Search and Results
      • PIC-SURE User Guide
        • Getting Started
          • Requirements and Login
          • Available Data and Managing Data Access
            • TOPMed and TOPMed related datasets
            • BioLINCC Datasets
            • CONNECTS Dataset
        • Data Organization in PIC-SURE
        • PIC-SURE Features and General Layout
        • PIC-SURE Open Access vs. PIC-SURE Authorized Access
          • PIC-SURE Open Access
          • PIC-SURE Authorized Access
        • Data Analysis Using the PIC-SURE API
        • Additional Resources
        • PIC-SURE API Documentation
        • Appendix 1: BioData Catalyst Identifiers - dbGaP, TOPMed, and PIC-SURE
        • Appendix 2: Table of Harmonized Variables
      • Discovering Data Using Gen3
        • Dictionary
        • Exploration
        • Query
        • Workspace
        • Profile
        • PFB Files
        • Current Projects
    • Analyze Data
      • Transferring Files Between Seven Bridges and Terra
      • Seven Bridges
        • Knowledge Center
        • Getting Started Guide
        • Comprehensive Analysis Tips
        • Troubleshooting Tasks
        • GWAS with GENESIS workflows
        • Annotation Explorer
      • Terra
        • Account Setup
          • Billing
          • Managing Costs
        • Workspace Setup
          • Data Storage & Management
          • Collaboration
          • Security
        • Bring Data into a Workspace
          • Bring in Data from Gen3
          • From Terra’s Data Library
          • Use Your Own Data with Terra
        • Run Analyses
          • Batch Processing with Workflows
          • Interactive Analysis
          • Genome-Wide Association Studies
        • Troubleshooting & Support
      • Dockstore
        • Launch workflows with BioData Catalyst
        • Discover our catalog
        • Intro to Docker, WDL, CWL
        • Dockstore Forum
        • Contribute to the community
    • Community Tools & Integration
      • Bring Your Own Tool(s)
        • BYOT Glossary
        • Working with Docker
        • Creating, testing & scaling WDL workflows
        • Creating, testing & scaling CWL workflows
        • Version Control, Publishing & Validation of Workflows
        • Advanced Topics
      • Import a Dockstore App With Seven Bridges
    • Writing BDC into a Grant Proposal
    • Incurring Cloud Costs
    • Release Notes
      • 2025-01-15 NHLBI BioData Catalyst Ecosystem Release Notes
      • 2024-10-21 NHLBI BioData Catalyst Ecosystem Release Notes
      • 2024-07-02 NHLBI BioData Catalyst Ecosystem Release Notes
      • 2024-04-01 NHLBI BioData Catalyst Ecosystem Release Notes
      • 2024-01-08 NHLBI BioData Catalyst Ecosystem Release Notes
      • 2023-10-04 NHLBI BioData Catalyst Ecosystem Release Notes
      • 2023-07-11 NHLBI BioData Catalyst Ecosystem Release Notes
      • 2023-04-04 BioData Catalyst Ecosystem Release Notes
      • 2023-01-09 BioData Catalyst Ecosystem Release Notes
      • 2022-10-03 BioData Catalyst Ecosystem Release Notes
      • 2022-07-11 BioData Catalyst Ecosystem Release Notes
      • 2022-04-04 BioData Catalyst Ecosystem Release Notes
      • 2022-01-24 BioData Catalyst Ecosystem Release Notes
      • 2021-10-04 BioData Catalyst Ecosystem Release Notes
      • 2021-07-09 BioData Catalyst Ecosystem Release Notes
      • 2021-04-02 BioData Catalyst Ecosystem Release Notes
      • 2021-01-15 BioData Catalyst Ecosystem Release Notes
      • 2020-10-23 BioData Catalyst Ecosystem Release Notes
      • 2020-08-24 BioData Catalyst Ecosystem Release Notes
      • 2020-04-02 BioData Catalyst Ecosystem Release Notes
    • Data Versioning Release Notes
    • NIH RECOVER Release Notes
  • Tutorials: Videos & Modules
    • Seven Bridges Tutorials
      • Genetic Association Testing using GENESIS Workflows
      • Estimating and Managing Your Cloud Costs
    • Terra Tutorials
      • Getting Started with Gen3 Data on Terra Tutorial
      • Genome Wide Association Study with 1000 Genomes Data Tutorial
      • Genome Wide Association Study with TOPMed Data Tutorial
      • TOPMed Aligner, or, How to Import Data From Gen3 into Terra and Run a Workflow on It
  • Data Management
    • Data Management Strategy
    • Instructions for Data Submission to BDC
      • De-identification Readme
      • Data Dictionary Requirement
    • dbGaP Study Configuration Process for Submission of Data to BDC
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  1. Written Documentation
  2. Analyze Data
  3. Terra
  4. Run Analyses

Interactive Analysis

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Last updated 4 years ago

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The interactive analysis features of Terra support interactive data exploration, including the use of statistical methods and graphical display. Versatile and powerful interactive analysis is provided through Jupyter Notebooks in both Python and R languages.

Jupyter Notebooks run on a virtual machine (VM). You can customize your VM’s installed software by selecting one of Terra's preinstalled notebook cloud environments or choosing a custom environment by specifying a Docker container. Dockers ensure you and your colleagues analyze with the same software, making your results reproducible.

Article: Article: ​ Article: ​Article: ​Article: ​Video: Video: Workspace: Workspace: Workspace: Workspace:

Interactive statistics and visualization with Jupyter notebooks
Customizing your interactive analysis application compute
Terra's Jupyter Notebooks environment Part I: Key components
Terra's Jupyter Notebooks environment Part II: Key operations
Terra's Jupyter Notebooks environment Part III: Best Practices
Notebooks overview
Notebooks Quickstart walkthrough
Notebooks Quickstart workspace
BioData Catalyst notebooks collection
PIC-SURE Tutorial in R
PIC-SURE Tutorial in Python